Friday, February 13, 2009

My blog is interfering with Valentine's day.....

On Monday, we performed an experiment that will test the theory that dessication resistant organisms are also gamma radiation resistant. All 78 strains were exposed to 0, 3, 6, and 16 kGY and will be kept in a desiccated environment (humidity <5%) for 42 days. One colony from each plate was diluted to 300 ul and then divided into 4 tubes. The 1st plate will receive no radiationThis will be our control plate. Also, one organism a control plate was made for each strain and will not be kept in a dessicated environment. The tubes are incubated for 42 days. Each strain was spotted on a plate and will be kept in a dessicated environment for 42 days.

Dessication resistant organisms are thought to be inherently radiation resistant because the same DNA repairs mechanisms are used to survive both. For example, dessication and radiation both cause double stranded DNA breaks. Therefore, an organism who is dessication resistant already has the required machinery to repair the DNA damage caused by radiation. Also, we counted plates from the unradiated soil samples streaked on 1/21/09.


Our group looked for suspect Modestobacter colonies (pink, cream, dark brown colonies). Also, the results of our plate counts are attached in the excel document. Our plate counts showed that organisms streaked on 1/10 PCA had the most cfu/gram. This might be because the 1/10 PCA has limited nutrients that the resemble the nutrients of the soil sample and hence meet the needs of the organism without overwhelming it. The PCA might contain too much nutrients, and the 1/100 PCA might be not be enough. The plate counts should what was expected. The colony forming units declined with each dilution. We selected 10 strains that had colonies that were suspect Modestobacter, and we restreaked them onto the media in which they grew best. The graph of Modestobacter suspects is in the excel document.

Another test that we are performing on the strains is to test for starch hydrolysis. We have not yet streaked all of our strains on the starch plates because we simply ran out of media.
Sean Michael reran our DNA on the gel with better results. All but 73 ran on the gel. Yay!!!!

On a light note, I’m having the best Valentine’s Day ever. Some of you may think this is cheesy, but my boyfriend is taking me around campus to each of the places on the “101 things to do before you leave LSU” list. At each place I have a rose. How exciting! The journey started today with lunch at the faculty club, a visit to the African American center, the internationcultural center, and the alumni place (la da cook something?).


Gobi-1 1/10 PCA -1 dilution:

9 comments:

  1. I think Sean Michael might have reisolated the DNA from the cells on the agar plare? Check with him - then I will make a post of the before and after pics so as we can discuss why it went wrong first time and why one strain gives no DNA

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  2. Christy also sent me some tables related to the counts and isolates of her group - they are posted at AirSet

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  3. yes, thats what sean michael did (started completely over by getting more colonies off of the selected plates)...he said he thought we might have not collected enough colonies off of the plate originally

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  4. Yes, I beleive you are exactly right Christy..haha, I knew this was you!! The 1/10 PCA had the most cfu/g because it has the nutrients that most resemble the soil. The PCA has too many nutrients and the 1/100 has too little.

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  5. Yes, I did do the DNA extraction over again then ran a new gel.

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  6. Ok I understand now. Sean Michael isolated the DNA again and then ran the gel. I wonder why only one of them didn't run. I'm confused about what we might have done wrong in the first place because we followed the DNA isolation protocol exactly. When running the gel, the DNA seemed to be in the wells. What happened!

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  7. I just thought of something. Maybe when we isolated the DNA the first time the cells didn't not open up with the bead beating.

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  8. Ha.. cristi, you crack me up... how are my 4125 notes working out for you?

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  9. Cristi is hilarious!!

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